PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC656_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 411aa    MW: 45759.5 Da    PI: 5.9144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC656_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000292482851355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  RrC656_p2 248 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 285
                67799************55......5555567777777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-5248291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-5248303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDVEESSFLT QYPNLYPYLK NHALNNTSSV ETERLITDQS YPGLDSTFHT LSTDKEEAER  60
VPERRCESSR LDALISSGYN FPGSELLEAL GSGFKQTSRG LEELVKSEHS SATIRPTDDN  120
MSHSQLTFDS APENLLDAVV ASVVCHSDGN ARDDIFSSRS VESFLTSMEP SGHNNHIVDR  180
AMNQLPLAEV DTQQNPSDIC GAFSSIGFSS TCPSSSSDHF QTSLEMMPKK NKKRAKPGES  240
SRPRPRDRQL IQDRIKELRE LVPNGSKCSI DSLLERTIKH MLFLQNVTKH ADKLSKSANS  300
KMQQKETGAQ GSTCAVEVGG HLQVCSIIVE NLNKHGMVLI EMLCEECSHF LEISNVIKSL  360
DLTILRGITE AQGDKTWICF VVESQSNKVM QRMDILWSLV QIFQPKANGK R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529850.0AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144244.10.0PREDICTED: transcription factor bHLH155-like isoform X1
RefseqXP_009144245.10.0PREDICTED: transcription factor bHLH155-like isoform X2
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLM4DP330.0M4DP33_BRARP; Uncharacterized protein
STRINGBra018273.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7